Bone2 is a present-day human bone sample for which DNA methylation was measured using whole-genome bisulfite sequencing (WGBS). The data is provided in two formats: as an mmSample object dump, and as a Bismark file.
CpG coordinates is the pickled python object that contains the coordinates of the CpG position in hg19.

We provide the genotype information (*.geno), as well the accompanying information on the individuals (*.ind) and SNPs (*.snp) or the samples used in

Lily Agranat-Tamir, Shamam Waldman, Mario Martin, David Gokhman, Nadav Mishol, Tzilla Eshel, Olivia Cheronet, Nadin Rohland, Swapan Mallick, Nicole Adamski, Ann Marie Lawson, Matthew Mah, Megan Michel, Jonas Oppenheimer, Kristin Stewardson, Francesca Candilio, Denise Keating, Beatriz Gamarra, Shay Tzur, Mario Novak, Rachel Kalisher, Shlomit Bechar, Vered Eshed, Douglas J. Kennett, Marina Faerman, Naama Yahalom-Mack, Janet M Monge, Yehuda Govrin, Yigal Erel, Benjamin Yakir, Ron Pinhasi*, Shai Carmi*, Israel Finkelstein*, Liran Carmel*, David Reich* (2020). The Genomic History of the Bronze Age Southern Levant. Cell 181:1146-1157.

The data comprises the full reconstructed methylated (as β-values) along the entire Neanderthal and Denisovan genomes, as was published in

David Gokhman, Eitan Lavi, Kay Prüfer, Mario F. Fraga, José A. Riancho, Janet Kelso, Svante Pääbo, Eran Meshorer*, Liran Carmel* (2014). Reconstructing the DNA methylation maps of the Neandertal and the Denisovan. Science 344:523-527.