Code contains all Matlab functions required to run the code described
in the paper.
Bone5 contains methylation values in the Bone 5 reference. The file
should be unzipped and then used in RoAM.
CpG coordinates is the pickled python object that contains
the coordinates of the CpG position in hg19.
The
data contains the genotype information (*.geno),
as well the accompanying information on the individuals (*.ind) and SNPs (*.snp).
Big
Excel tables that are referred to in the thesis.
The data comprises the full reconstructed methylated (as β-values) along the entire
Neandertal and
the
Denisovan
genomes.