Comparative Genomics Toolbox for Matlab®

We have tried to design a toolbox that will facilitate research in the field of comparative genomics. Currently, this toolbox is not highly developed, with only two objects.

Binary Multiple Alignment. We have built the binalign object that is designed to represent alignment of presence/absence pattern of binary characters.

Phylogenetic trees. The phyltree object describes a phylogenetic tree, which is inherited from the bintree in the multivariate analysis toolbox.

Navigate to: General Description     List of Objects     List of Functions     Download

Multiple Alignment:

binalign

multiple alignment

Phylogenetic trees:

phyltree

phylogenetic tree (inheritted from bintree)

Pattern manipulations:

binarypattern

ensures binary representation of patterns.

decimalpattern

ensures decimal representation of patterns.

grouppatterns

lists only the distinct patterns.

patterninfo

retreives some information on pattern(s).

readexpression

read expression data.

readsamples

reads sample data.

stringpattern

ensures string representation of patterns.

The toolbox is freely available from this site. The latest release is CG_13Sep2010.
Prerequisite: the toolbox General Utilities.

To recieve updates, new releases, etc, please subscribe below:

Name: email:

To stop recieving emails with updates, new releases, etc, please unsubscribe below:

email: